IL_9EHO_110
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGA*UACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_110 not in the Motif Atlas
- Homologous match to IL_9AXU_094
- Geometric discrepancy: 0.1469
- The information below is about IL_9AXU_094
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9EHO|1|5|U|4251
9EHO|1|5|C|4252
9EHO|1|5|G|4253
9EHO|1|5|A|4254
*
9EHO|1|5|U|4268
9EHO|1|5|A|4269
9EHO|1|5|C|4270
9EHO|1|5|G|4271
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- Large ribosomal subunit protein eL42
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