IL_9EHO_113

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_113 not in the Motif Atlas

Homologous match to IL_9H3G_118

Geometric discrepancy: 0.1344

The information below is about IL_9H3G_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

9EHO|1|5|U|4367
9EHO|1|5|U|4368
9EHO|1|5|G|4369
*
9EHO|1|5|U|4403
9EHO|1|5|G|4404

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

Large ribosomal subunit protein uL16