IL_9EHO_115

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_115 not in the Motif Atlas

Homologous match to IL_9PN5_101

Geometric discrepancy: 0.0834

The information below is about IL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9EHO|1|5|C|4376
9EHO|1|5|C|4377
9EHO|1|5|A|4378
9EHO|1|5|A|4379
9EHO|1|5|G|4380
*
9EHO|1|5|C|4390
9EHO|1|5|G|4391
9EHO|1|5|A|4392
9EHO|1|5|C|4393
9EHO|1|5|G|4394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL16

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein