IL_9EHO_137

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

9EHO|1|5|U|5129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_137 not in the Motif Atlas

Homologous match to IL_8GLP_178

Geometric discrepancy: 0.2553

The information below is about IL_8GLP_178

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9EHO|1|5|G|5128
9EHO|1|5|U|5129
9EHO|1|5|A|5130
*
9EHO|1|5|U|5151
9EHO|1|5|C|5152

Current chains

Chain 5

28S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein eL24