IL_9EHO_138
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_138 not in the Motif Atlas
- Geometric match to IL_8OI5_132
- Geometric discrepancy: 0.2098
- The information below is about IL_8OI5_132
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9EHO|1|5|A|5130
9EHO|1|5|G|5131
9EHO|1|5|A|5132
9EHO|1|5|G|5133
*
9EHO|1|5|C|5148
9EHO|1|5|G|5149
9EHO|1|5|A|5150
9EHO|1|5|U|5151
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S8
- Chain R
- Ribosomal protein L19
- Chain W
- Large ribosomal subunit protein eL24
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