IL_9EHO_139

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

9EHO|1|7|A|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_139 not in the Motif Atlas

Geometric match to IL_9PN5_133

Geometric discrepancy: 0.142

The information below is about IL_9PN5_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9EHO|1|7|C|15
9EHO|1|7|A|16
*
9EHO|1|7|U|62
9EHO|1|7|A|63
9EHO|1|7|G|64

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein

Chain I

Large ribosomal subunit protein uL16

Chain J

60S ribosomal protein L11