IL_9EHO_149
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 9EHO|1|AA|A|761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_149 not in the Motif Atlas
- Geometric match to IL_8GLP_190
- Geometric discrepancy: 0.0814
- The information below is about IL_8GLP_190
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9EHO|1|AA|C|38
9EHO|1|AA|A|39
9EHO|1|AA|A|40
9EHO|1|AA|A|41
*
9EHO|1|AA|U|759
9EHO|1|AA|G|760
9EHO|1|AA|A|761
9EHO|1|AA|C|762
9EHO|1|AA|G|763
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain FF
- 40S ribosomal protein S4
- Chain KK
- Small ribosomal subunit protein uS4
- Chain ZZ
- 40S ribosomal protein S24
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