IL_9EHO_155

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAUC*GCG

Length

8 nucleotides

Bulged bases

9EHO|1|AA|A|115, 9EHO|1|AA|A|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_155 not in the Motif Atlas

Geometric match to IL_9AXU_007

Geometric discrepancy: 0.269

The information below is about IL_9AXU_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9EHO|1|AA|U|114
9EHO|1|AA|A|115
9EHO|1|AA|A|116
9EHO|1|AA|U|117
9EHO|1|AA|C|118
*
9EHO|1|AA|G|592
9EHO|1|AA|C|593
9EHO|1|AA|G|594

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S8

Chain MM

40S ribosomal protein S11