IL_9EHO_158

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_158 not in the Motif Atlas

Homologous match to IL_9PN5_153

Geometric discrepancy: 0.1658

The information below is about IL_9PN5_153

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9EHO|1|AA|U|158
9EHO|1|AA|G|159
9EHO|1|AA|U|160
*
9EHO|1|AA|A|170
9EHO|1|AA|G|171
9EHO|1|AA|A|172

Current chains

Chain AA

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS6

Chain ZZ

40S ribosomal protein S24