IL_9EHO_165

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_165 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.1028

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9EHO|1|AA|G|682
9EHO|1|AA|G|683
9EHO|1|AA|A|684
*
9EHO|1|AA|U|699
9EHO|1|AA|A|700
9EHO|1|AA|C|701

Current chains

Chain AA

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS6

Chain JJ

40S ribosomal protein S8

Chain V

Large ribosomal subunit protein uL14