IL_9EHO_171

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_171 not in the Motif Atlas

Geometric match to IL_9DFE_030

Geometric discrepancy: 0.3635

The information below is about IL_9DFE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9EHO|1|AA|G|810
9EHO|1|AA|U|811
9EHO|1|AA|A|812
*
9EHO|1|AA|U|827
9EHO|1|AA|A|828
9EHO|1|AA|A|829
9EHO|1|AA|C|830

Current chains

Chain AA

18S rRNA

Nearby chains

Chain KK

Small ribosomal subunit protein uS4

Chain ZZ

40S ribosomal protein S24