IL_9EHO_173

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9EHO|1|AA|U|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|A|844
9EHO|1|AA|G|845
9EHO|1|AA|G|846
9EHO|1|AA|G|847
9EHO|1|AA|C|848
9EHO|1|AA|A|849
9EHO|1|AA|A|850
9EHO|1|AA|G|851
9EHO|1|AA|U|852
9EHO|1|AA|C|853
*
9EHO|1|AA|G|880
9EHO|1|AA|C|881
9EHO|1|AA|U|882

Current chains

Chain AA

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS5

Chain EE

40S ribosomal protein S3

Chain KK

Small ribosomal subunit protein uS4

Chain ff

eS30