IL_9EHO_180
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUC*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_180 not in the Motif Atlas
- Homologous match to IL_9H3G_199
- Geometric discrepancy: 0.2134
- The information below is about IL_9H3G_199
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9EHO|1|AA|G|1546
9EHO|1|AA|A|1547
9EHO|1|AA|U|1548
9EHO|1|AA|C|1549
*
9EHO|1|AA|G|1628
9EHO|1|AA|C|1629
9EHO|1|AA|A|1630
9EHO|1|AA|C|1631
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain CC
- Small ribosomal subunit protein eS1
- Chain OO
- Small ribosomal subunit protein uS15
- Chain cc
- 40S ribosomal protein S27
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