IL_9EHO_187
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_187 not in the Motif Atlas
- Geometric match to IL_8GLP_245
- Geometric discrepancy: 0.1518
- The information below is about IL_8GLP_245
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.4
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 62
Unit IDs
9EHO|1|AA|U|1719
9EHO|1|AA|C|1720
9EHO|1|AA|C|1721
*
9EHO|1|AA|G|1748
9EHO|1|AA|G|1749
9EHO|1|AA|G|1750
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain CC
- Small ribosomal subunit protein eS1
- Chain OO
- Small ribosomal subunit protein uS15
- Chain bb
- 40S ribosomal protein S26
- Chain cc
- 40S ribosomal protein S27
Coloring options: