IL_9EHO_189

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9EHO|1|AA|A|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_189 not in the Motif Atlas

Homologous match to IL_9PN5_195

Geometric discrepancy: 0.0795

The information below is about IL_9PN5_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9EHO|1|AA|G|1820
9EHO|1|AA|A|1821
*
9EHO|1|AA|U|2599
9EHO|1|AA|A|2600
9EHO|1|AA|C|2601

Current chains

Chain AA

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS5

Chain bb

40S ribosomal protein S26