IL_9EHO_196

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9EHO|1|AA|U|1943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_196 not in the Motif Atlas

Homologous match to IL_9H3G_218

Geometric discrepancy: 0.1469

The information below is about IL_9H3G_218

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9EHO|1|AA|G|1942
9EHO|1|AA|U|1943
9EHO|1|AA|G|1944
*
9EHO|1|AA|C|2406
9EHO|1|AA|C|2407

Current chains

Chain AA

18S rRNA

Nearby chains

Chain LL

Plectin/eS10 N-terminal domain-containing protein

Chain ee

Small ribosomal subunit protein uS14