IL_9EHO_206

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

9EHO|1|AA|C|2501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_206 not in the Motif Atlas

Geometric match to IL_5F5H_001

Geometric discrepancy: 0.2303

The information below is about IL_5F5H_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9EHO|1|AA|G|2441
9EHO|1|AA|A|2442
*
9EHO|1|AA|U|2500
9EHO|1|AA|C|2501
9EHO|1|AA|C|2502

Current chains

Chain AA

18S rRNA

Nearby chains

Chain GG

Ribosomal S5

Chain TT

Small ribosomal subunit protein uS13

Chain UU

40S ribosomal protein S19

Chain aa

40S ribosomal protein S25