IL_9EHO_210
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_210 not in the Motif Atlas
- Homologous match to IL_9H3G_234
- Geometric discrepancy: 0.0846
- The information below is about IL_9H3G_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9EHO|1|AA|G|2607
9EHO|1|AA|C|2608
9EHO|1|AA|C|2609
9EHO|1|AA|C|2610
*
9EHO|1|AA|G|2762
9EHO|1|AA|U|2763
9EHO|1|AA|A|2764
9EHO|1|AA|A|2765
9EHO|1|AA|C|2766
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 1
- RNA (5'-R(P*AP*CP*CP*AP*AP*AP*AP*AP*CP*C)-3')
- Chain 3
- Transfer RNA; tRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- eS32
Coloring options: