IL_9EHO_214
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_214 not in the Motif Atlas
- Homologous match to IL_9H3G_238
- Geometric discrepancy: 0.4296
- The information below is about IL_9H3G_238
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9EHO|1|AA|C|2622
9EHO|1|AA|G|2623
9EHO|1|AA|A|2624
9EHO|1|AA|U|2625
*
9EHO|1|AA|A|2746
9EHO|1|AA|G|2747
9EHO|1|AA|A|2748
9EHO|1|AA|G|2749
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain YY
- Small ribosomal subunit protein uS12
- Chain n
- eS32
Coloring options: