IL_9EHO_216
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAC*GCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_216 not in the Motif Atlas
- Geometric match to IL_1ZZ5_002
- Geometric discrepancy: 0.2587
- The information below is about IL_1ZZ5_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9EHO|1|AA|A|2628
9EHO|1|AA|A|2629
9EHO|1|AA|C|2630
*
9EHO|1|AA|G|2742
9EHO|1|AA|C|2743
9EHO|1|AA|U|2744
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- Large ribosomal subunit protein uL14
- Chain YY
- Small ribosomal subunit protein uS12
Coloring options: