IL_9EHO_220
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_220 not in the Motif Atlas
- Homologous match to IL_9H3G_243
- Geometric discrepancy: 0.1397
- The information below is about IL_9H3G_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.4
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 26
Unit IDs
9EHO|1|AA|C|2647
9EHO|1|AA|G|2648
9EHO|1|AA|G|2649
9EHO|1|AA|A|2650
9EHO|1|AA|U|2651
*
9EHO|1|AA|A|2721
9EHO|1|AA|G|2722
9EHO|1|AA|A|2723
9EHO|1|AA|A|2724
9EHO|1|AA|G|2725
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain HH
- Small ribosomal subunit protein eS6
- Chain JJ
- 40S ribosomal protein S8
- Chain W
- Large ribosomal subunit protein eL24
Coloring options: