IL_9ELY_001

3D structure

PDB id

9ELY (explore in PDB, NAKB, or RNA 3D Hub)

Description

raiA RNA motif (Clostridium acetobutylicum)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

9ELY|1|A|G|10, 9ELY|1|A|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ELY_001 not in the Motif Atlas

Geometric match to IL_7OS0_002

Geometric discrepancy: 0.0824

The information below is about IL_7OS0_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9ELY|1|A|G|9
9ELY|1|A|G|10
9ELY|1|A|U|11
9ELY|1|A|U|12
*
9ELY|1|A|A|195
9ELY|1|A|C|196

Current chains

Chain A

raiA RNA

Nearby chains