IL_9ELY_009

3D structure

PDB id

9ELY (explore in PDB, NAKB, or RNA 3D Hub)

Description

raiA RNA motif (Clostridium acetobutylicum)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUAGUAG*CGAAACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ELY_009 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.1539

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26290.1

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9ELY|1|A|A|124
9ELY|1|A|U|125
9ELY|1|A|U|126
9ELY|1|A|A|127
9ELY|1|A|G|128
9ELY|1|A|U|129
9ELY|1|A|A|130
9ELY|1|A|G|131
*
9ELY|1|A|C|153
9ELY|1|A|G|154
9ELY|1|A|A|155
9ELY|1|A|A|156
9ELY|1|A|A|157
9ELY|1|A|C|158
9ELY|1|A|U|159

Current chains

Chain A

raiA RNA

Nearby chains