3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CUGAC*GGA(PSU)G
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_017 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.269
The information below is about IL_4WFL_001
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9F1B|1|A2|C|188
9F1B|1|A2|U|189
9F1B|1|A2|G|190
9F1B|1|A2|A|191
9F1B|1|A2|C|192
*
9F1B|1|A2|G|207
9F1B|1|A2|G|208
9F1B|1|A2|A|209
9F1B|1|A2|PSU|210
9F1B|1|A2|G|211

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ah
40S ribosomal protein S8

Coloring options:


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