IL_9F1B_017

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_017 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.269

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9F1B|1|A2|C|188
9F1B|1|A2|U|189
9F1B|1|A2|G|190
9F1B|1|A2|A|191
9F1B|1|A2|C|192
*
9F1B|1|A2|G|207
9F1B|1|A2|G|208
9F1B|1|A2|A|209
9F1B|1|A2|PSU|210
9F1B|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8