IL_9F1B_029

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

9F1B|1|A2|G|589

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_029 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.111

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

9F1B|1|A2|G|564
9F1B|1|A2|A|565
9F1B|1|A2|G|566
*
9F1B|1|A2|C|586
9F1B|1|A2|G|587
9F1B|1|A2|A|588
9F1B|1|A2|G|589
9F1B|1|A2|G|590
9F1B|1|A2|A2M|591
9F1B|1|A2|U|592
9F1B|1|A2|C|593

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

40S ribosomal protein S9