IL_9F1B_039

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

G(PSU)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_039 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.1487

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

9F1B|1|A2|G|681
9F1B|1|A2|PSU|682
9F1B|1|A2|U|683
*
9F1B|1|A2|A|1024
9F1B|1|A2|A|1025
9F1B|1|A2|U|1026

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ak

40S ribosomal protein S11

Chain Am

40S ribosomal protein S13

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23