IL_9F1B_069

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_069 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.103

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9F1B|1|A2|G|1236
9F1B|1|A2|G|1237
*
9F1B|1|A2|C|1522
9F1B|1|A2|A|1523
9F1B|1|A2|C|1524

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

P-site tRNA

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18

Chain Ay

40S ribosomal protein S25