IL_9F1B_082

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9F1B|1|A2|C|1434, 9F1B|1|A2|C|1435, 9F1B|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_082 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2878

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9F1B|1|A2|U|1409
9F1B|1|A2|A|1410
*
9F1B|1|A2|U|1433
9F1B|1|A2|C|1434
9F1B|1|A2|C|1435
9F1B|1|A2|C|1436
9F1B|1|A2|C|1437
9F1B|1|A2|C|1438
9F1B|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

Small ribosomal subunit protein uS9

Chain At

Small ribosomal subunit protein uS10