IL_9F1B_112

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

9F1B|1|B5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_112 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.1698

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|A|121
9F1B|1|B5|U|122
*
9F1B|1|B5|A|147
9F1B|1|B5|A|148
9F1B|1|B5|A|149
9F1B|1|B5|U|150
9F1B|1|B5|G|151
9F1B|1|B5|U|152

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15