IL_9F1B_120

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9F1B|1|B5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_120 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1721

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9F1B|1|B5|G|348
9F1B|1|B5|A|349
9F1B|1|B5|C|350
*
9F1B|1|B8|G|25
9F1B|1|B8|C|26

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26