IL_9F1B_123
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1B_123 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.088
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9F1B|1|B5|G|415
9F1B|1|B5|U|416
9F1B|1|B5|G|417
9F1B|1|B5|A|418
9F1B|1|B5|A|419
9F1B|1|B5|A|420
9F1B|1|B5|C|421
*
9F1B|1|B8|G|13
9F1B|1|B8|U|14
9F1B|1|B8|G|15
9F1B|1|B8|G|16
9F1B|1|B8|A|17
9F1B|1|B8|U|18
9F1B|1|B8|C|19
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BP
- Large ribosomal subunit protein uL22
- Chain Be
- Ribosomal protein L32
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