IL_9F1B_134

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUCUCG*CC

Length

8 nucleotides

Bulged bases

9F1B|1|B5|U|502, 9F1B|1|B5|C|503, 9F1B|1|B5|U|504, 9F1B|1|B5|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_134 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1717

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

9F1B|1|B5|G|501
9F1B|1|B5|U|502
9F1B|1|B5|C|503
9F1B|1|B5|U|504
9F1B|1|B5|C|505
9F1B|1|B5|G|506
*
9F1B|1|B5|C|648
9F1B|1|B5|C|649

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BQ

Large ribosomal subunit protein eL18