3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
9F1B|1|B5|A|843, 9F1B|1|B5|A|844
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_141 not in the Motif Atlas
Geometric match to IL_1R3E_001
Geometric discrepancy: 0.2369
The information below is about IL_1R3E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

9F1B|1|B5|A|717
9F1B|1|B5|C|718
*
9F1B|1|B5|G|842
9F1B|1|B5|A|843
9F1B|1|B5|A|844
9F1B|1|B5|U|845

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BF
Ribosomal Protein uL30

Coloring options:


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