IL_9F1B_158

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9F1B|1|B5|C|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_158 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2118

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9F1B|1|B5|G|1304
9F1B|1|B5|G|1305
*
9F1B|1|B5|C|1320
9F1B|1|B5|G|1321
9F1B|1|B5|C|1322
9F1B|1|B5|C|1323

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15