IL_9F1B_161

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

9F1B|1|B5|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_161 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.3596

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9F1B|1|B5|G|1390
9F1B|1|B5|C|1391
9F1B|1|B5|C|1392
*
9F1B|1|B5|G|1403
9F1B|1|B5|C|1404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30

Chain BQ

Large ribosomal subunit protein eL18

Chain Bb

60S ribosomal protein L29