IL_9F1B_168

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_168 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0889

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9F1B|1|B5|C|1506
9F1B|1|B5|G|1507
9F1B|1|B5|A|1508
9F1B|1|B5|A|1509
9F1B|1|B5|G|1510
*
9F1B|1|B5|U|1527
9F1B|1|B5|G|1528
9F1B|1|B5|G|1529
9F1B|1|B5|A|1530
9F1B|1|B5|G|1531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a