3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
9F1B|1|B5|G|1914
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_192 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.3507
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

9F1B|1|B5|G|1912
9F1B|1|B5|U|1913
9F1B|1|B5|G|1914
9F1B|1|B5|G|1915
9F1B|1|B5|C|1916
*
9F1B|1|B5|G|1928
9F1B|1|B5|A|1929
9F1B|1|B5|A|1930
9F1B|1|B5|U|1931
9F1B|1|B5|C|1932

Current chains

Chain B5
28S rRNA

Nearby chains

Chain Bs
Large ribosomal subunit protein uL10
Chain Bt
60S ribosomal protein L12

Coloring options:


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