IL_9F1B_199

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GG(A2M)G*CU(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_199 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2504

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F1B|1|B5|G|2242
9F1B|1|B5|G|2243
9F1B|1|B5|A2M|2244
9F1B|1|B5|G|2245
*
9F1B|1|B5|C|2645
9F1B|1|B5|U|2646
9F1B|1|B5|OMC|2647
9F1B|1|B5|C|2648

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

Large ribosomal subunit protein eL34

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like