3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_200 not in the Motif Atlas
Geometric match to IL_4V9F_050
Geometric discrepancy: 0.1079
The information below is about IL_4V9F_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

9F1B|1|B5|G|2249
9F1B|1|B5|G|2250
9F1B|1|B5|U|2251
9F1B|1|B5|U|2252
*
9F1B|1|B5|A|2626
9F1B|1|B5|C|2627

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BX
Large ribosomal subunit protein uL23
Chain Bg
Large ribosomal subunit protein eL34
Chain Bj
Ribosomal protein L37
Chain Bl
60S ribosomal protein L39-like

Coloring options:


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