IL_9F1B_213

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9F1B|1|B5|G|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_213 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.1932

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9F1B|1|B5|C|2547
9F1B|1|B5|G|2548
*
9F1B|1|B5|C|2553
9F1B|1|B5|G|2554
9F1B|1|B5|G|2555

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BU

60S ribosomal protein L22

Chain BX

Large ribosomal subunit protein uL23

Chain Cu

Transcription factor BTF3