3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
AUC*G(A2M)U
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_222 not in the Motif Atlas
Geometric match to IL_5VCI_005
Geometric discrepancy: 0.1576
The information below is about IL_5VCI_005
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_64417.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
18

Unit IDs

9F1B|1|B5|A|3362
9F1B|1|B5|U|3363
9F1B|1|B5|C|3364
*
9F1B|1|B5|G|3561
9F1B|1|B5|A2M|3562
9F1B|1|B5|U|3563

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain Az
60S ribosomal protein L41

Coloring options:


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