3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_229 not in the Motif Atlas
Homologous match to IL_8C3A_091
Geometric discrepancy: 0.3012
The information below is about IL_8C3A_091
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

9F1B|1|B5|C|3440
9F1B|1|B5|U|3441
9F1B|1|B5|G|3442
*
9F1B|1|B5|C|3473
9F1B|1|B5|G|3474

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain Aa
40S ribosomal protein S3a
Chain BA
Large ribosomal subunit protein uL2

Coloring options:


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