IL_9F1B_230

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9F1B|1|B5|A|3443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_230 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3537

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9F1B|1|B5|G|3442
9F1B|1|B5|A|3443
9F1B|1|B5|A|3444
9F1B|1|B5|U|3445
9F1B|1|B5|G|3446
*
9F1B|1|B5|C|3471
9F1B|1|B5|G|3472
9F1B|1|B5|C|3473

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

Large ribosomal subunit protein uL2