IL_9F1B_235

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

9F1B|1|B5|C|3523, 9F1B|1|B5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1B|1|B5|C|3513
9F1B|1|B5|5MC|3514
9F1B|1|B5|A|3515
9F1B|1|B5|A|3516
9F1B|1|B5|A2M|3517
9F1B|1|B5|U|3518
9F1B|1|B5|G|3519
9F1B|1|B5|C|3520
9F1B|1|B5|C|3521
9F1B|1|B5|U|3522
9F1B|1|B5|C|3523
9F1B|1|B5|OMG|3524
9F1B|1|B5|U|3525
*
9F1B|1|B5|A|3539
9F1B|1|B5|OMC|3540
9F1B|1|B5|G|3541
9F1B|1|B5|C|3542
9F1B|1|B5|G|3543

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41