IL_9F1B_267

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_267 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2422

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9F1B|1|B5|A|4281
9F1B|1|B5|OMC|4282
9F1B|1|B5|C|4283
*
9F1B|1|B5|G|4295
9F1B|1|B5|G|4296
9F1B|1|B5|U|4297

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

P-site tRNA

Chain BA

Large ribosomal subunit protein uL2

Chain BI

60S ribosomal protein L10