IL_9F1B_306

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

G(PSU)UAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_306 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3523

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9F1B|1|A2|G|108
9F1B|1|A2|PSU|109
9F1B|1|A2|U|110
9F1B|1|A2|A|111
9F1B|1|A2|U|112
*
9F1B|1|A2|A|350
9F1B|1|A2|C|351
9F1B|1|A2|G|352
9F1B|1|A2|U|353
9F1B|1|A2|C|354

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11