IL_9F1C_003
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 9F1C|1|A2|A|517
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1C_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3382
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
9F1C|1|A2|C|37
9F1C|1|A2|A|38
9F1C|1|A2|A|39
9F1C|1|A2|A|40
*
9F1C|1|A2|U|515
9F1C|1|A2|G|516
9F1C|1|A2|A|517
9F1C|1|A2|OMC|518
9F1C|1|A2|G|519
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Ai
- 40S ribosomal protein S9
- Chain Ax
- 40S ribosomal protein S24
Coloring options: