IL_9F1C_004

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9F1C|1|A2|U|44, 9F1C|1|A2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_004 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.1403

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9F1C|1|A2|G|41
9F1C|1|A2|A|42
9F1C|1|A2|U|43
9F1C|1|A2|U|44
9F1C|1|A2|A|45
9F1C|1|A2|A|46
9F1C|1|A2|G|47
*
9F1C|1|A2|C|480
9F1C|1|A2|G|481
9F1C|1|A2|C|482

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23