IL_9F1C_083

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9F1C|1|A2|C|1424

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_083 not in the Motif Atlas

Geometric match to IL_8GLP_055

Geometric discrepancy: 0.2603

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9F1C|1|A2|C|1417
9F1C|1|A2|C|1418
*
9F1C|1|A2|G|1423
9F1C|1|A2|C|1424
9F1C|1|A2|G|1425

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

Small ribosomal subunit protein uS9

Chain As

40S ribosomal protein S19