IL_9F1C_087

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_087 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1073

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

9F1C|1|A2|G|1605
9F1C|1|A2|G|1606
9F1C|1|A2|G|1607
9F1C|1|A2|A|1608
9F1C|1|A2|U|1609
9F1C|1|A2|C|1610
9F1C|1|A2|G|1611
*
9F1C|1|A2|C|1630
9F1C|1|A2|A|1631
9F1C|1|A2|U|1632
9F1C|1|A2|G|1633
9F1C|1|A2|A|1634
9F1C|1|A2|A|1635
9F1C|1|A2|C|1636

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ar

40S ribosomal protein S18

Chain As

40S ribosomal protein S19

Chain Ay

40S ribosomal protein S25